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D-COVRIN.2.1.2 - Report on the comparisons of variants and reference sample exchange - Bioinformatics Ring Trial

descriptionPublicationkeyboard_double_arrow_right Project deliverable , Other literature type 13 Apr 2022 Old English Publisher:ZenodoFunded by:EC | One Health EJP

Authors: Isidro, Joana; De Sabato, Luca; Arnold, Knijn; Pinto, Miguel; Gomes, João Paulo; ANSES (01), APHA (21), FLI (10), INIAV (35), IZSAM (28), Sciensano (04), ISS (27), INSA (36) (Sub-Task/ Task Leaders); All COVRIN Partners; +2 Authors

doi: 10.5281/zenodo.6458215 , 10.5281/zenodo.6458214

D-COVRIN.2.1.2 - Report on the comparisons of variants and reference sample exchange - Bioinformatics Ring Trial

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Abstract

JIP06-COVID19-COVRIN-WP2-T2.1 Genome analyses JIP06-COVID19-COVRIN-WP2-ST2.1.2 Harmonisation sampling and methods NGS Deliverable D-COVRIN.2.1.2 - Report on the comparisons of variants and reference sample exchange ______________________________________________________________________ T2.1 leader: Vítor Borges (INSA, 36) ST2.1.2 leader: Gabriele Vaccari (ISS, 27) Task participants: All partners Partners participating in Bioinformatics Ring Trial: INSA (36), ISS (27), ANSES (01), APHA (21), FLI (10), INIAV (35), IZSAM (28), Sciensano (04) _______________________________________________________________________ This deliverable describes the activities and outcomes of the COVRIN WP2-T2.1 sub-task ST2.1.2 (Harmonisation sampling and methods NGS), in which a Bioinformatics Ring Trial was carried out in order to assess the reproducibility of bioinformatics pipelines (i.e., from raw reads to consensus sequences, using reference-based mapping) currently being applied for genome analyses of SARS-CoV-2 (and other coronaviruses - CoV) in the partners institutes.

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Istituto Superiore di Sanità
Italy
National Institute of Health Dr. Ricardo Jorge
Portugal

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3 Research products, page 1 of 1

Antimicrobial Resistance in Non-Typhoid Salmonella
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datasets-sars-cov-2 software on GitHub
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COVRIN_taskT2.1_scripts software on GitHub
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