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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2022
License: CC BY
Data sources: ZENODO
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Supplementary Dataset for Deep learning based kcat prediction enables improved enzyme constrained model reconstruction

Research datakeyboard_double_arrow_right Dataset 05 Aug 2021Publisher:Zenodo
Authors: Feiran Li; Le Yuan;

doi: 10.5281/zenodo.5164209 , 10.5281/zenodo.5797013 , 10.5281/zenodo.5164210 , 10.5281/zenodo.6438262

Supplementary Dataset for Deep learning based kcat prediction enables improved enzyme constrained model reconstruction

Abstract

This dataset is the supplementary dataset for the paper "Deep learning based kcat prediction enables improved enzyme constrained model reconstruction". Protein sequence fasta files, deep learning predicted kcat values, classcial-ecGEMs, DL-ecGEMs and Posterior-mean-ecGEMs for 343 yeast/fungi species are available in this dataset.This repository also contains the computed results for reproducing the figures as model_build_files . The scripts can be found in Github (https://github.com/SysBioChalmers/DLKcat)

Related Organizations
Keywords

kcat, Genome scale metabolic model, enzyme constrained metabolic model, turnover rates

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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