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ZENODO
Dataset . 2022
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2022
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2022
License: CC BY
Data sources: ZENODO
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OMEN data set: Tokheim pancancer data set with genome-wide interaction network

Research datakeyboard_double_arrow_right Dataset 06 Apr 2022Publisher:Zenodo
Authors: Van Daele, Dries; Weytjens, Bram; De Raedt, Luc; Marchal, Kathleen;

doi: 10.5281/zenodo.6419096 , 10.5281/zenodo.6419097

OMEN data set: Tokheim pancancer data set with genome-wide interaction network

Abstract

OMEN is a Network-based Driver Gene Identification method that exploits Mutual Exclusivity. This repository stores the data used in a pancancer experiment showcasing this method. It consists of - [tokheim_pancancer_somatic_CADD.pl] A file containing CADD probabilities for gene-patient pairs (derived from the pancancer data set in Tokheim, Collin J., et al. "Evaluating the evaluation of cancer driver genes." Proceedings of the National Academy of Sciences 113.50 (2016): 14330-14335.) formatted to be used by OMEN. - [tokheim_pancancer_somatic_coverage_ranks.pl] A file containing gene coverage data (derived from the CADD data) formatted to be used by OMEN. - [network.pl] A file containing a genome-wide interaction network consisting of high quality metabolic interactions from Recon X and literature curated interactions from Intact. Recon X and Intact data was acquired from Pathway Commons version 8. The resulting network covers 7901 samples, and contains 15.694 nodes and 178.051 edges.

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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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Cancer Research