ChemChaste1.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 31 Mar 2022Publisher:ZenodoFunded by:UKRI | 18-BBSRC-NSF/BIO - Unders..., UKRI | EPSRC and MRC Centre for ..., UKRI | How do the atypical cadhe...

Authors: Connah G. M. Johnson; Fletcher, Alexander G.; Soyer, Orkun S;

doi: 10.5281/zenodo.6400762 , 10.5281/zenodo.6400761

ChemChaste1.0

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Abstract

ChemChaste is a computational tool for the spatial simulation of multicellular and bulk biochemistry. It can simulate an arbitrary number of diffusing chemicals with spatially heterogeneous diffusion coefficients. It can simulate cells within a spatial domain and having their own intracellular reactions that can be linked to the environmental domain. ChemChaste uses a file-based interface to define the simulation / model parameters. Description of ChemChaste is currently available in a pre-print at https://doi.org/10.1101/2021.10.21.465304.

Related Organizations

University of Sheffield
United Kingdom
University of Warwick
United Kingdom

Keywords

Systems biology, spatial simulation, microbial ecology, cell metabolism

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