Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2022
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Other literature type . 2022
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2022
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
https://dx.doi.org/10.34734/fz...
Conference object . 2022
Data sources: Datacite
versions View all 4 versions
addClaim

Semantic Metadata Annotation Service

Authors: Sasse, Julia; Darms, Johannes; Fluck, Juliane;

Semantic Metadata Annotation Service

Abstract

Operationalising the FAIR (Findable, Accessible, Interoperable, Reusable) guiding principles for scientific data management and stewardship [1] enhance the use of data beyond its original purpose. Data analysis of different sources for example requires interoperability that allows machines to automatically combine and process the data. Semantic interoperability, i.e., the ability to automatically interpret the shared information in a meaningful way, is given special attention in the biomedical domain. Its realization by ontology-based semantic annotation is still a challenge due to various standards and semantic richness of the data. Plenty semi-structured and structured study documents exist that are not yet semantically annotated. Despite of the laborious annotation process, semantic annotation is largely done manually and annotators have to manage data standards and formats as well as a variety of complex terminologies and ontologies for annotation. Therefore, a semi-automatic approach to support researchers in semantic annotation and handling the different data formats is desirable. In this context, the National Research Data Infrastructure for Personal Health Data (NFDI4Health) aims to improve the FAIR access to structured health data originating from epidemiology studies, public health and clinical studies and support the harmonization of (meta-)data [2]. For the latter, we present an approach for a cross-domain and extensible semantic metadata annotation service, that addresses the problems stated above. Basic requirements for the metadata annotation service are an open accessible web service, open code and an interface to integrate different terminology lookup services with access to terminology concepts depending on the use case. For the medical domain, support for the SNOMED terminology and common standards such as HL7 FHIR [3] are additional requirements. While some metadata annotation services already exist (e.g. [4]), they are in many cases tailored to specific data formats and terminologies or they do not meet all basic prerequisites. A first prototype was developed that meets the basic requirements and can be adapted to specific use cases. Terminology search via the Ontology Lookup Service [5] was implemented in an open-source web application to provide access to a wide range of terminologies. Usability tests with users indicated a good user experience. Currently, the annotation service is being further adapted for a use case in the medical domain. Therefore, the HL7 FHIR standard will be integrated and the SNOMED CT terminology will be used for semantic annotation of medical terms. References [1 ] Wilkinson, M.D.; Dumontier, M.; Aalbersberg, I.J.J.; Appleton, G.; Axton, M.; Baak, A.; Blomberg, N.; Boiten, J.-W.; da Silva Santos, L.B.; Bourne, P.E.; et al. The FAIR Guiding Principles for Scientific Data Management and Stewardship. Sci Data 2016, 3, 160018, doi:10.1038/sdata.2016.18. [2] Fluck, J.; Lindstädt, B.; Ahrens, W.; Beyan, O.; Buchner, B.; Darms, J.; Depping, R.; Dierkes, J.; Neuhausen, H.; Müller, W.; et al. NFDI4Health – Nationale

doi:10.5281/ZENODO.6366013

Country
Germany
  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 16
    download downloads 13
  • 16
    views
    13
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
0
Average
Average
Average
16
13
Green