# KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping ## 1.code-and-documents This directory contains the source code, executable binaries, and documents of KMCP, which are also hosted at Github: https://github.com/shenwei356/kmcp . Databases, usage, and tutorials of KMCP are also available at https://bioinf.shenwei.me/kmcp/. - [Installation](https://bioinf.shenwei.me/kmcp/download) - [Databases](https://bioinf.shenwei.me/kmcp/database) - Tutorials - [Taxonomic profiling](https://bioinf.shenwei.me/kmcp/tutorial/profiling) - [Sequence and genome searching](https://bioinf.shenwei.me/kmcp/tutorial/searching) - [Usage](https://bioinf.shenwei.me/kmcp/usage) - [Benchmarks](https://bioinf.shenwei.me/kmcp/benchmark) - [FAQs](https://bioinf.shenwei.me/kmcp/faq) ## 2.databases This directory contains the building steps and reference genome accessions for KMCP databases used in the manuscript. cami2 Databases used in benchmarks on CAMI2 mouse gut datasets kmcp Databases used in other benchmarks ## 3.figures Each subdirectory contains steps to run the benchmark (`README.md`), steps for plotting (`README-plot.md`), benchmark results, and figures.

This work was supported by the National Natural Science Foundation of China [32000474 to W.S.]; by the China Postdoctoral Science Foundation [2021M700640 to W.S.]; and by the Chongqing Talents Project [cstc2021ycjh-bgzxm0150 to P.H.].