<script type="text/javascript">
<!--
document.write('<div id="oa_widget"></div>');
document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=undefined&type=result"></script>');
-->
</script>

COPY SCRIPT

For further information contact us at helpdesk@openaire.eu

fmalmeida/MpGAP: A generic multi-platform genome assembly pipeline

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 03 Mar 2022Publisher:Zenodo

Authors: Felipe Marques de Almeida; Georgios Joannis Pappas Jr.;

doi: 10.5281/zenodo.6325086 , 10.5281/zenodo.13735976 , 10.5281/zenodo.3445485 , 10.5281/zenodo.7046782 , 10.5281/zenodo.10790446 , 10.5281/zenodo.12804291

fmalmeida/MpGAP: A generic multi-platform genome assembly pipeline

- Summary
- Related research
  (5)
- Metrics

Abstract

MpGAP is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. It is an easy to use pipeline that adopts well known software for _de novo_ genome assembly of Illumina, Pacbio and Oxford Nanopore sequencing data through illumina only, long reads only or hybrid modes.

Related Organizations

University of Brasília
Brazil

5 Research products, page 1 of 1

fmalmeida/MpGAP: A generic multi-platform genome assembly pipeline
2021HasVersion
fmalmeida/MpGAP v3.0.1
2021HasVersion
fmalmeida/MpGAP: A genome assembly pipeline for multiple sequencing platforms.
2019HasVersion
fmalmeida/MpGAP: fmalmeida/MpGAP v3.0
2021HasVersion
fmalmeida/MpGAP: A multi-plataform genome assembly pipeline
2020HasVersion

Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average