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ZENODO
Software . 2016
License: https://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
Data sources: Datacite
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ZENODO
Software . 2016
License: http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
Data sources: ZENODO
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Software . 2016
License: http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
Data sources: ZENODO
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TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 09 Sep 2016Publisher:Zenodo
Authors: Liu Juntao; Yu Ting; Jiang Tao; Li Guojun;

doi: 10.5281/zenodo.61994

TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs

Abstract

This software is free, open source software released under the GNU General Public License. TransComb is an efficient genome-guided trascriptome assembler for RNA-seq data. It can assemble all transcripts from short paired-end reads using a reference genome and analyze their abundances. The software expects as input alignment file by Tophat2 BAM format, and ouput all assembled candidate transcripts in gtf format. This software is free to use, modify, redistribute without any restrictions, except including the license provided with the distribution.

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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