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pkar96/Coupling-between-DNA-replication-segregation-and-the-onset-of-constriction-in-Escherichia-coli: Couple_replication_division

Authors: Prathitha Kar;

pkar96/Coupling-between-DNA-replication-segregation-and-the-onset-of-constriction-in-Escherichia-coli: Couple_replication_division

Abstract

Contains MATLAB codes used to generate Figure 3 and Figure 5 of the manuscript, "Coupling between DNA replication, segregation and the onset of constriction in Escherichia coli". Code used to generate Figure 3 is named Figure_3.m. The code used to generate Figure 5 is present in the Figure 5 folder. The folder contains files- ao_model_change_c.m - Simulates the adder per origin model ch_model_change_c.m - Simulates the Cooper Helmstetter model parallel_adder_change_c.m - Simulates the parallel adder model indep_adder_change_c.m - Simulates the independent adder model call.m - Calls one of the above cell cycle models. The output obtained contains cell cycle characteristics such as C+D period, generation time, length at birth, division, and initiation for multiple cells in a population. These cell cycle characteristics can be plotted against time from the thymine shift. Cell.m - A class that creates an object of type Cell. The object contains all the cell characteristics required during the cell cycle models' simulation. binning_with_error_1.m - Used to get the binned data given the raw data and the bin edges.

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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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