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These data are the results from three independent runs of DCSsim and DCSsub for TF, sharp and broad mark signals in 50:50 regulation scenarios for mm10 chr1, chr8, chr11, chr19 and chrX. Simulated data from DCSsim: simulated_ChIP-seq_data.zip set1: TF 50:50 chr11 set4: TF 50:50 chr8 set7: TF 50:50 chrX set10: TF 50:50 chr1 set22: TF 50:50 chr19 set2: Sharp mark 50:50 chr11 set5: Sharp mark 50:50 chr8 set8: Sharp mark 50:50 chrX set11: Sharp mark 50:50 chr1 set23: Sharp mark 50:50 chr19 set3: Broad mark 50:50 chr11 set6: Broad mark 50:50 chr8 set9: Broad mark 50:50 chrX set12: Broad mark 50:50 chr1 set24: Broad mark 50:50 chr19 Sub-sampled data from DCSsub: sub-sampled_ChIP-seq_data.zip Set1: C/EBPa-ChIP-seq 50:50 chr11 Set2: C/EBPa-ChIP-seq 50:50 chr8 Set3: C/EBPa-ChIP-seq 50:50 chrX Set4: C/EBPa-ChIP-seq 50:50 chr1 Set5: H3K27ac-ChIP-seq 50:50 chr11 Set6: H3K27ac-ChIP-seq 50:50 chr8 Set7: H3K27ac-ChIP-seq 50:50 chrX Set8: H3K27ac-ChIP-seq 50:50 chr1 Set9: H3K36me3-ChIP-seq 50:50 chr11 Set10: H3K36me3-ChIP-seq 50:50 chr8 Set11: H3K36me3-ChIP-seq 50:50 chrX Set12: H3K36me3-ChIP-seq 50:50 chr1 C/EBPa-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set8) H3K27ac-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set9) H3K36me3-ChIP-seq 50:50 chr19 can be found in sub-sampled_ChIP-seq_data.zip of the FRIP data set (DOI: 10.5281/zenodo.6042902 set10)
{"references": ["Eder, T., Grebien, F. Comprehensive assessment of differential ChIP-seq tools guides optimal algorithm selection. Genome Biol 23, 119 (2022). https://doi.org/10.1186/s13059-022-02686-y"]}
Simulated ChIP-seq data, DCSsim, Sub-sampled ChIP-seq data, Simulated NGS data, DCSsub
Simulated ChIP-seq data, DCSsim, Sub-sampled ChIP-seq data, Simulated NGS data, DCSsub
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