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Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core

Authors: Alexander J. Pak; Alvin Yu; Zunlong Ke; John A. G. Briggs; Gregory A. Voth;

Cooperative multivalent receptor binding promotes exposure of the SARS-CoV-2 fusion machinery core

Abstract

Abstract The molecular events that permit the spike glycoprotein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) to bind, fuse, and enter cells are important to understand for both fundamental and therapeutic reasons. Spike proteins consist of S1 and S2 domains, which recognize angiotensin-converting enzyme 2 (ACE2) receptors and contain the viral fusion machinery, respectively. Ostensibly, the binding of spike trimers to ACE2 receptors promotes the preparation of the fusion machinery by dissociation of the S1 domains. We report the development of bottom-up coarse-grained (CG) models validated with cryo-electron tomography (cryo-ET) data, and the use of CG molecular dynamics simulations to investigate the dynamical mechanisms involved in viral binding and exposure of the S2 trimeric core. We show that spike trimers cooperatively bind to multiple ACE2 dimers at virion-cell interfaces. The multivalent interaction cyclically and processively induces S1 dissociation, thereby exposing the S2 core containing the fusion machinery. Our simulations thus reveal an important concerted interaction between spike trimers and ACE2 dimers that primes the virus for membrane fusion and entry.

Country
United States
Keywords

Science, Virus Attachment, Molecular Dynamics Simulation, Membrane Fusion, Article, Vaccine Related, Protein Domains, Biodefense, Receptors, Humans, SARS-CoV-2, Prevention, Q, COVID-19, Virus Internalization, Spike Glycoprotein, Virus, Coronavirus, Infectious Diseases, Emerging Infectious Diseases, Host-Pathogen Interactions, Spike Glycoprotein, Coronavirus, Receptors, Virus, Angiotensin-Converting Enzyme 2, Protein Multimerization, Algorithms, Protein Binding

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
45
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Top 10%
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7
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