What's Changed Bids report by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/1 small fix in a filter that skipped json files when they were in the root folder by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/8 Readme update: Add converter and viewer by @tanguyduval in https://github.com/bids-standard/bids-matlab/pull/13 [WIP] Unit tests - read metadata by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/10 Query by @tanguyduval in https://github.com/bids-standard/bids-matlab/pull/12 multi file datasets (such as BrainVision) should be represented as a single dataset, not multiple by @robertoostenveld in https://github.com/bids-standard/bids-matlab/pull/14 Add some extra comments to better explain each function by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/21 More detailed error messages by @apjanke in https://github.com/bids-standard/bids-matlab/pull/30 gitignore: ignore local copy of bids-examples by @apjanke in https://github.com/bids-standard/bids-matlab/pull/31 util.tsvread: Make it a recursive call to self by @apjanke in https://github.com/bids-standard/bids-matlab/pull/33 util: Support jsonencode/jsondecode as regular functions by @apjanke in https://github.com/bids-standard/bids-matlab/pull/24 Include QUERY in the H1 line for query's helptext by @apjanke in https://github.com/bids-standard/bids-matlab/pull/29 Make function helptext more concise with a +bids/Contents.m by @apjanke in https://github.com/bids-standard/bids-matlab/pull/32 README: Document requirements by @apjanke in https://github.com/bids-standard/bids-matlab/pull/36 Handle non-standard-format metadata JSON files by @apjanke in https://github.com/bids-standard/bids-matlab/pull/37 Doc: Typo fixes in comments and helptext by @apjanke in https://github.com/bids-standard/bids-matlab/pull/38 Refactoring and renaming by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/41 Create a tsvwrite function by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/40 Tolerant option for bids.layout by @tanguyduval in https://github.com/bids-standard/bids-matlab/pull/11 docs: add gllmflndn as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/52 docs: add Remi-Gau as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/53 docs: add apjanke as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/54 docs: add tanguyduval as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/55 docs: add robertoostenveld as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/56 Fix or suppress M-lint code inspection warnings by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/57 Move +bids/private stuff to +bids/+internal? by @apjanke in https://github.com/bids-standard/bids-matlab/pull/25 [INFRA] Use Ubuntu Focal 20.04 in Travis tests by @gllmflndn in https://github.com/bids-standard/bids-matlab/pull/72 [FIX] Filter subjects and sessions when querying modalities (issue #65) by @gllmflndn in https://github.com/bids-standard/bids-matlab/pull/71 [FIX] fix writing nan issues when dealing with arrays by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/74 Add Brainstorm to README by @cMadan in https://github.com/bids-standard/bids-matlab/pull/62 add code of conduct from bids-specs by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/80 [INFRA] set up miss_hit linter config and github action by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/58 Add tsvwrite to documentation by @gllmflndn in https://github.com/bids-standard/bids-matlab/pull/85 miss_hit.cfg: define project_root by @apjanke in https://github.com/bids-standard/bids-matlab/pull/87 docs: add apjanke as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/88 README: fix MISS_HIT name styling by @apjanke in https://github.com/bids-standard/bids-matlab/pull/89 Add .editorconfig? by @apjanke in https://github.com/bids-standard/bids-matlab/pull/86 docs: add apjanke as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/90 docs: add cMadan as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/91 docs: add guiomar as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/93 Skip datasets when labelled as non-conformant by @gllmflndn in https://github.com/bids-standard/bids-matlab/pull/94 [DOC] Describe what bids-matlab can and cannot do by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/84 apply MISS_HIT linter across the board by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/95 Decision making & contributing by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/81 [FIX] add "dir" to the list of func entities by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/99 [INFRA] Customize code suggestions & completions by adding a functionSignatures file by @mslw in https://github.com/bids-standard/bids-matlab/pull/42 docs: add mslw as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/106 [INFRA] conversion BIDS schema to json by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/101 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/110 [INFRA] run tests with github action by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/100 [INFRA] switch to moxunit for tests by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/108 refactoring and linting by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/109 [ENH] update schema - changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/119 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/120 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/125 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/128 Feature #asl bids by @HenkMutsaerts in https://github.com/bids-standard/bids-matlab/pull/127 [MISC] refactor and add tests for layout asl by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/132 docs: add HenkMutsaerts as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/135 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/136 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/138 docs: add nbeliy as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/139 [ENH] implement bids-schema - part 1 by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/124 [ENH] schemaless layout indexes json files by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/147 [ENH] add possibility to query for (and filter queries with) extensions by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/150 [ENH] improve management of "intended_for" by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/151 [ENH] update fieldname m0 scan estimate by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/149 docs: add mnoergaard as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/158 docs: add nbeliy as a contributor by @allcontributors in https://github.com/bids-standard/bids-matlab/pull/159 Bug in file_utils by @nbeliy in https://github.com/bids-standard/bids-matlab/pull/166 [HOT FIX] fixed bug in file_utils by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/168 [HOT FIX] implement hot fix for tsv write by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/170 [ENH] schema-less indexing collects files prefix that can be returned / filtered by query by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/154 [HOT FIX] implement hot fix for tsv write by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/173 [INFRA] BIDS schema update by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/180 [INFRA] remove obsolete schema files by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/181 [FIX] lower priority to use SPM function to deal with json files by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/178 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/188 [DOC] update instructions to run the tests by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/183 [ENH] index sessions.tsv and scans.tsv by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/182 [FIX] default pattern of get_metada expects suffixes to be preceded by underscore by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/179 [FIX] default pattern of get_metada expects suffixes to be preceded by underscore by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/189 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/191 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/193 [FIX] ensures that metadata file have the same prefix as the queried file by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/195 [DOC] update install isntructions in README by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/197 [INFRA] update miss_hit version and add pre-commit hook by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/198 [WIP] Function to copy derivatives by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/171 [FIX] fix and refactor report by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/206 [Fix] fix issues when parsing prefix and ordering entities after parsing filename by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/210 [FIX] fix bugs in copy to derivatives by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/207 [FIX] return empty output of append to layout when failing to parse using schema by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/212 [INFRA] remove unnecessary tsv files in test folder by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/216 [INFRA] remove unnecessary tsv files in test folder by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/217 [INFRA] add copyright checks from miss_hit by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/218 Changes by create-pull-request action by @github-actions in https://github.com/bids-standard/bids-matlab/pull/220 [ENH] implement input parser for copy_to_derivatives by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/221 [ENH] copy participants, sessions, scans TSV to derivatives by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/222 [ENH] add basic function to generate and update dataset_description by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/184 [ENH] add basic filename, path and derivatives JSON creation by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/203 [ENH] add basic capabilities to initialize a dataset by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/224 [REF] refactor schema functions into a class by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/225 [INFRA] fix CI by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/227 [DOC] set up sphinx and read the docs by @Remi-Gau in https://github.com/bids-standard/bids-matlab/pull/229 Refactor report and update do

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