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kundajelab/tfmodisco: Bringing down Leiden memory use - patch 1

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 27 Jan 2022Publisher:Zenodo
Authors: Av Shrikumar; Tian, Katherine; Annashcherbina; Žiga Avsec; , Amr; McAnany, Charles; Kaczmarzyk, Jakub; +5 Authors

doi: 10.5281/zenodo.5909083 , 10.5281/zenodo.1250002

kundajelab/tfmodisco: Bringing down Leiden memory use - patch 1

Abstract

Corresponds to PR https://github.com/kundajelab/tfmodisco/pull/99 Removed some tolist() commands that might have been contributing to memory explosion More detailed printouts of memory usage Made it possible to specify a different number of parallel runs for the main clustering step via the n_cores_mainclustering argument to TfModiscoSeqletsToPatternsFactory

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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