Supplementary files containing datasets needed to reproduce the results of the manuscript "Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks" by S. Choudhury et al. The code to use with these data and reproduce the manuscript results is available at https://github.com/EPFL-LCSB/rekindle and https://gitlab.com/EPFL-LCSB/rekindle. The execution of parts of this code is dependent on the SkimPy toolbox (https://github.com/EPFL-LCSB/skimpy). Refer to the readme files on the REKINDLE code repositories for more details. Temporal evolution of perturbations in non-linear ordinary differential equations ode_solutions_physiology1.zip - contains 100 subfolders, each subfolder containing the time-series evolution data of 1000 kinetic models parameterized by REKINDLE generated parameter sets for physiology 1, each of the 1000 models having a random perturbation. The detailed instructions and the main body of the dataset is available here: https://zenodo.org/record/5803120