Annotation of the the assembled genome of Fusarium oxysporum f. sp. albedinis strain 133, the causal agent of date palm dieback.

Annotation of the the assembled genome of Fusarium oxysporum f. sp. albedinis strain 133 (Khayi et al., 2020). Gene prediction and annotation were carried out using funnotate pipeline v1.8.1 (Stajich, 2020), which includes masking, ab initio gene-prediction training, using Augustus and Genmark, with the EST dataset reported to the Ganoderma mycocosm repository, gene prediction, and the assignment of functional annotation to protein-coding gene models.

Related Organizations

Justus Liebig University Giessen
Germany
Université Mohammed VI Polytechnique
Morocco
Helmholtz Zentrum München
Germany
Institute of Bioinformatics and Systems Biology
Germany

Keywords

genome annotation, Fusarium oxysporum f. sp. albedinis, Date Palm dieback,

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