Semi-simulated dataset of indel calling tool evaluation

The semi-simulated datasets used in Ning Wang, et al. 100bp_5X_500_Venter_read1.fq.gz & 100bp_5X_500_Venter_read2.fq.gz: 5X coverage, 100bp read length semi-simulated paired-end sequencing FASTQ files. 100bp_30X_500_Venter_read1.fq.gz & 100bp_30X_500_Venter_read2.fq.gz: 30X coverage, 100bp read length semi-simulated paired-end sequencing FASTQ files. 250bp_30X_500_Venter_read1.fq.gz & 250bp_30X_500_Venter_read2.fq.gz: 30X coverage, 250bp read length semi-simulated paired-end sequencing FASTQ files. 100bp_60X_500_Venter_read1.fq.gz & 100bp_60X_500_Venter_read2.fq.gz: 60X coverage, 100bp read length semi-simulated paired-end sequencing FASTQ files. Haplotype_1_no_gap.fa & Haplotype_2_no_gap.fa: the semi-simulated dipoid human genome hg19 chromosome 1 and chromosome 2, including HuRef indels used in Ning Wang, et al. In order to use ART (fastq simulator) to generate simulated fastq fiels, the gaps (Ns) of genome were removed. chr1_chr2_variants_truthset.txt: types, position, size and genotype of HuRef indels used in Ning Wang, et al.

Related Organizations

University of Turku
Finland

Keywords

Semi-simulated human paired-end sequencing dataset

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