Processed functional regions datasets to be used with GREEN-VARAN This repository contains the GRCh37 and GRCh38 files as indexed BED files. The GRCh38 version of UCNE and TAD were obtained by coordinate liftover. TFBS from ENCODE v3 DNase hypersensitivity peaks from ENCODE v3 UCNE (ultra-conserved non-coding elements) from https://ccg.epfl.ch/UCNEbase/ TAD (topologically associating chromatin domains) from http://dna.cs.miami.edu/TADKB/ Super enhancer from dbSuper at http://bioinfo.au.tsinghua.edu.cn/dbsuper/ Please refer to the original datasets listed in related identifiers and references for eventual limits in use and distribution

{"references": ["TADKB paper: https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5551-2", "UCNE database paper: https://academic.oup.com/nar/article/41/D1/D101/1057253", "dbSuper paper: https://academic.oup.com/nar/article/44/D1/D164/2502575", "ENCODE paper: https://www.nature.com/articles/s41586-020-2493-4"]}