We estimated the seafloor topography beneath the Amery Ice Shelf, East Antarctica, from airborne gravity anomaly through a nonlinear inversion method called simulated annealing. The estimation results provide a view of the seafloor beneath the Amery Ice Shelf, where direct bathymetric observations are rare. The model, 'gravity_estimated_seafloor_topography_beneath_the_Amery_Ice_Shelf.nc', is in NetCDF format which can be read through MATLAB commands "ncdisp" and "ncread". Contents of the model can be found in "contents.txt". The MATLAB program "nc2mat.m" reads the NetCDF ".nc" format model and saves the variables in the model to a MATLAB ".mat" format file.