LA1141 × OH8245 inbred backcross (IBC) single nucleotide polymorphism (SNP) markers for genetic studies

{"references": ["Hosmani PS, Flores-Gonzalez M, van de Geest H, et al. 2019. An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps. bioRxiv doi: https://doi.org/10.1101/767764", "Sim SC, Durstewitz G, Plieske J, et al. 2012. Development of a large SNP genotyping array and generation of high-density genetic maps in tomato. PLoS ONE doi.org/10.1371/journal.pone.0040563"]}

The LA1141 × OH8245 157 polymorphic SNP markers from an optimized tomato panel Sim et al., 2012 were used for linkage map construction in the BC2S3 IBC and composite interval mapping QTL analysis. Genetic map position and physical position corresponding to Sl4.0 (Hosmani et al., 2019), and flanking sequences are provided.

The LA1141 x OH8245 IBC population is available upon request

Related Organizations

The Ohio State University
United States

Keywords

Markers, Solcap, QTL, Linkage map, Solanum galapagense, Inbred backcross, Physical position, Composite interval mapping

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