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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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FASTA file containing the MYB encoding gene An2-like genomic sequences corresponding to wild and cultivated tomato accessions

Authors: Fenstemaker, Sean; Sim, Leah; Cooperstone, Jessica; Francis, David;

FASTA file containing the MYB encoding gene An2-like genomic sequences corresponding to wild and cultivated tomato accessions

Abstract

FASTA sequence corresponds to the MYB encoding gene An2-like. The genomic sequences correspond to Solanum galagpagnese accession LA1141 (this study), S. lycopersicum variety OH8245 (this study), S. lycopersicum variety Heinz 1706 reference genome (Hosmani et al., 2019), S. lycopersicum variety Indigo Rose (Yan et al., 2020), S. lycopersicum accession LA1996 [MN242011.1 (Colanero et al., 2020)], S. chilense accession LA1930 [MN242012.1 (Colanero et al., 2020)], and 84 tomato accessions published as part of The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Local sequences databases were made and retrieved using BLAST version/2018-08 for 84 accessions from The 100 Tomato Genome Sequencing Consortium (The 100 Tomato Genome Sequencing Consortium et al., 2014). Sequences corresponding to Heinz 1706 (Hosmani et al., 2018), Indigo Rose [MN433087 (Yan et al., 2020)], S. lycopersicum accession LA1996 [MN242011.1, EF433417.1 (Sapir et al., 2008; Colanero et al., 2020)], S. chilense accession LA1930 [MN242012.1 (Colanero et al., 2020)] were accessed using the Basic Local Alignment Search Tool (BLAST) tool available from the Sol Genomics Network (SGN) (available at https://solgenomics.net/tools/blast/) and the National Center for Biotechnology Information (NCBI)(available at NCBI: https://www.ncbi.nlm.nih.gov).

{"references": ["Colanero, S., Tagliani, A., Perata, P., & Gonzali, S. (2020). Alternative splicing in the anthocyanin fruit gene encoding an R2R3 MYB transcription factor affects anthocyanin biosynthesis in tomato fruits.\u00a0Plant communications,\u00a01(1), 100006.", "Hosmani, P. S., Flores-Gonzalez, M., van de Geest, H., Maumus, F., Bakker, L. V., Schijlen, E., ... & Saha, S. (2019). An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps.\u00a0BioRxiv, 767764.", "100 Tomato Genome Sequencing Consortium, Aflitos, S., Schijlen, E., de Jong, H., de Ridder, D., Smit, S., ... & Peters, S. (2014). Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole\u2010genome sequencing.\u00a0The Plant Journal,\u00a080(1), 136-148.", "Yan, S., Chen, N., Huang, Z., Li, D., Zhi, J., Yu, B., ... & Qiu, Z. (2020). Anthocyanin Fruit encodes an R2R3\u2010MYB transcription factor, SlAN2\u2010like, activating the transcription of SlMYBATV to fine\u2010tune anthocyanin content in tomato fruit.\u00a0New Phytologist,\u00a0225(5), 2048-2063."]}

Raw FASTA files

Related Organizations
Keywords

Anthocyanin, An2-like, Purple, Solanum galapagense, FASTA, Tomato, Genomic sequence

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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