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License: CC BY
Data sources: Datacite
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Dataset . 2021
License: CC BY
Data sources: ZENODO
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Dataset . 2025
License: CC BY
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Dataset . 2022
License: CC BY
Data sources: Datacite
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Dataset . 2022
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
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ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
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Transformations in PubChem - Full Dataset

Authors: Schymanski, Emma; Bolton, Evan; Cheng, Tiejun; Thiessen, Paul; Zhang, Jian (Jeff); Helmus, Rick;

Transformations in PubChem - Full Dataset

Abstract

This is an archive of the data contained in the "Transformations" section in PubChem for integration into patRoon and other workflows. For further details see the ECI GitLab site: README and main "tps" folder. Credits: Concepts: E Schymanski, E Bolton, J Zhang, T Cheng; Code (in R): E Schymanski, R Helmus, P Thiessen Transformations: E Schymanski, J Zhang, T Cheng and many contributors to various lists! PubChem infrastructure: PubChem team Acknowledgements: ECI team who contributed to related efforts, especially: J. Krier, A. Lai, M. Narayanan, T. Kondic, P. Chirsir, E. Palm, Bashir Mayahi. All contributors to the NORMAN-SLE transformations! March 2025 released as v0.2.0 since the dataset grew by >3000 entries! Nov 2025 updated to new SMILES fields. The stats are: # 22 Nov. 2025 Unique Transformation Entries: 11190Unique Reactions by CID: 9323Unique Reactions by IK: 9310Unique Reactions by IKFB: 8742Unique NORMAN-SLE Compounds by CID: 8377Unique ChEMBL Compounds by CID: 1419Unique Compounds (all) by CID: 9435Unique Predecessors (all) by CID: 3811Unique Successors (all) by CID: 7454Range of XlogP Differences: -12.5,10Range of Mass Differences: -957.97490813,820.227106427

These files are in active development; formats may change in future versions

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transformations

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    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
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    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
2
Average
Average
Average
30
27
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