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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2021
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Data sources: Datacite
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ZENODO
Dataset . 2021
License: CC 0
Data sources: Datacite
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LMAS Test Dataset

Authors: Mendes, CI;
Abstract

LMAS is an automated workflow enabling the benchmarking of traditional and metagenomic prokaryotic de novo assembly software using defined mock communities. LMAS expects reference sequences in tripled version as to to ensure that contigs can fully align even with start-end overlap and regardless of their starting position relative to that of the linearised reference sequence. Read data in paired-end form is required to be passed on for the assembler. As proof-of concept, the eight bacterial genomes and four plasmids, in tripled form, of the ZymoBIOMICS Microbial Community Standards are made available to be used as reference. Simulated raw sequence data of the mock communities with evenly distributed reads, generated from the reference genomes, is also available to be used as input for the assemblers. Project repository: https://github.com/cimendes/LMAS

Keywords

mock community, benchmark, de novo assembly, Shotgun Metagenomics

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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
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47