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A. muricatus transcriptome assemblies generated using Trinity v2.11.0 (Haas et al. 2013; Grabherr et al. 2011; Henschel et al. 2012) • Amphibolurus-muricatus_brain.fa.tar.gz: Combined Trinity assembly of A. muricatus brain (male and female). • Amphibolurus-muricatus_combined.fa.tar.gz: Combined Trinity assembly of A. muricatus ovary, testis, and brain (male and female). • Amphibolurus-muricatus_female_brain.fa.tar.gz: Trinity assembly of female A. muricatus brain. • Amphibolurus-muricatus_male_brain.fa.tar.gz: Trinity assembly of male A. muricatus brain. • Amphibolurus-muricatus_ovary.fa.tar.gz: Trinity assembly of A. muricatus ovary. • Amphibolurus-muricatus_testis.fa.tar.gz: Trinity assembly of A. muricatus testis. References Grabherr, M.G., B.J. Haas, M. Yassour, J.Z. Levin, D.A. Thompson et al., 2011 Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nat Biotechnol 29 (7):644-652. Haas, B.J., A. Papanicolaou, M. Yassour, M. Grabherr, P.D. Blood et al., 2013 De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis. Nat Protoc 8 (8):1494-1512. Henschel, R., M. Lieber, L.-S. Wu, P.M. Nista, B.J. Haas et al., 2012 Trinity RNA-Seq assembler performance optimization, pp. 45 in Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment: Bridging from the eXtreme to the campus and beyond. Association for Computing Machinery, Chicag, IL, USA.
Jacky dragon, Transcriptome assembly, Trinity, Agamid lizard, Squamate, Amphibolurus muricatus
Jacky dragon, Transcriptome assembly, Trinity, Agamid lizard, Squamate, Amphibolurus muricatus
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