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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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Supporting data for the manuscript "Nerpa: a tool for discovering biosynthetic gene clusters of nonribosomal peptides"

Research datakeyboard_double_arrow_right Dataset 13 Sep 2021Publisher:Zenodo
Authors: Kunyavskaya, Olga; Tagirdzhanov, Azat M.; Caraballo-Rodríguez, Andrés Mauricio; Louis-Félix Nothias; Dorrestein, Pieter C.; Korobeynikov, Anton; Mohimani, Hosein; +1 Authors

doi: 10.5281/zenodo.5503984 , 10.5281/zenodo.5503983

Supporting data for the manuscript "Nerpa: a tool for discovering biosynthetic gene clusters of nonribosomal peptides"

Abstract

Preprocessed structures of nonribosomal peptides [NRPs] and genomic sequences (reference and representative genomes, biosynthetic gene clusters [BGCs]) used in the benchmark experiments in the Nerpa paper. Files description mibig_nrp_bacteria_preprocessed.tar.gz contains the preprocessed dataset of 194 bacterial NRP BGCs from the MIBiG database. mibig_nrp_bacteria_summary.tsv contains metadata for the MIBiG-NRP dataset. bacterial_ref_and_repr_genomes_20210604_preprocessed.tar.gz contains the preprocessed dataset of 13,399 reference and representative bacterial genomes from the NCBI RefSeq database (retrieved on 2021/06/04). bacterial_ref_and_repr_genomes_20210604_summary.txt contains metadata for the RefSeq dataset. pnrpdb_preprocessed.info contains the Nerpa-preprocessed pNRPdb database, a database of 8,368 known and putative NRP structures. pnrpdb_summary.tsv contains the pNRPdb database metadata.

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This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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