<script type="text/javascript">
<!--
document.write('<div id="oa_widget"></div>');
document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=undefined&type=result"></script>');
-->
</script>

COPY SCRIPT

For further information contact us at helpdesk@openaire.eu

Supporting data for the manuscript "Nerpa: a tool for discovering biosynthetic gene clusters of nonribosomal peptides"

Research datakeyboard_double_arrow_right Dataset 13 Sep 2021Publisher:Zenodo

Authors: Kunyavskaya, Olga; Tagirdzhanov, Azat M.; Caraballo-Rodríguez, Andrés Mauricio; Louis-Félix Nothias; Dorrestein, Pieter C.; Korobeynikov, Anton; Mohimani, Hosein; +1 Authors

doi: 10.5281/zenodo.5503984 , 10.5281/zenodo.5503983

Supporting data for the manuscript "Nerpa: a tool for discovering biosynthetic gene clusters of nonribosomal peptides"

- Summary
- Metrics

Abstract

Preprocessed structures of nonribosomal peptides [NRPs] and genomic sequences (reference and representative genomes, biosynthetic gene clusters [BGCs]) used in the benchmark experiments in the Nerpa paper. Files description mibig_nrp_bacteria_preprocessed.tar.gz contains the preprocessed dataset of 194 bacterial NRP BGCs from the MIBiG database. mibig_nrp_bacteria_summary.tsv contains metadata for the MIBiG-NRP dataset. bacterial_ref_and_repr_genomes_20210604_preprocessed.tar.gz contains the preprocessed dataset of 13,399 reference and representative bacterial genomes from the NCBI RefSeq database (retrieved on 2021/06/04). bacterial_ref_and_repr_genomes_20210604_summary.txt contains metadata for the RefSeq dataset. pnrpdb_preprocessed.info contains the Nerpa-preprocessed pNRPdb database, a database of 8,368 known and putative NRP structures. pnrpdb_summary.tsv contains the pNRPdb database metadata.

Related Organizations

St Petersburg University
Russian Federation
Carnegie Mellon University
United States
Sirius University of Science and Technology
Russian Federation
University of California, San Diego
United States

Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average

Usage byUsageCounts

visibility	views	10
download	downloads	10

10
views
10
downloads
Powered by

Found an issue? Give us feedback

visibility

download

Average