This is the first official release of HiPACE++. Dependencies AMReX: release 21.08 openPMD-api: releases 0.12.0-0.14.* List of PRs git log | grep -A 3 "Author: " | grep -B 1 "\-\-" | sed '/--/d' | sed -e 's/^ /- /' (in the future, one can use git log 21.09.. | grep -A 3 "Author: " | grep -B 1 "\-\-" | sed '/--/d' | sed -e 's/^ /- /') version 21.09 openPMD-api: 0.14.2 (#585) interpolate rho and psi at the boundaries (#572) print precision in output (#581) proper bin policy for tile sort (#577) use _rt in GetDomainLev (#579) Fix offset of interpolation and use second order interpolation in x and y (#570) fix transverse size of IO for level 1 (#569) Fix handling of tiling and GPU (#576) OpenMP handling (#575) Particle tiling and OpenMP threading (#551) change test number of cells to be a multiple of 8... (#571) fix slice IO for MR (#568) use correct longitudinal index in InterpolateBoundaries (#567) Mesh refinement: fix MR on GPUs (#564) enforceBC works for all levels (#566) remove unused parameters (#560) CMake: Warn Unknown Build Type (#563) Fix: CUDA Host-Side -O3 with CMake (#562) Add a few beam profiles (#558) Field Interpolation (#557) [mini] document compile option -DAMReX_LINEAR_SOLVERS (#559) CMake: FFTW Search w/ CMake Install (#553) add seed to write_beam.py (#555) initialize the plasma on the correct level (#554) Mesh refinement: enable level 1 to be longitudinally a different size than level 0 (#546) [mini] add missing/errorenous CMake in build description (#549) add OpenMP support for transverse and longitudinal derivative (#545) Unify forward and backward dst plans to save GPU memory (#537) Automatically use small DST for large Resolutions (#548) add OpenMP to CI tests (#547) New Discrete Sine Transformation (#534) Mesh refinement: fix parallel runs (#544) Add OpenMP for FFTW (#541) rescale weight of beam in normalized units (#543) ccache now on the JSC Juwels Booster (#539) FFTW: CMakeConfig Support (Windows, OpenMP) (#540) fix includes (#533) pass vector of geometries to field solve functions (#536) fix a few style warnings on AMD (#535) clean loop over levels (#531) Mesh refinement: first working field solve on level 1 (#530) Mesh refinement: fix boxarray (#529) Mesh refinement: multiple Poisson solvers (#527) Mesh refinement: Adding IO (#526) remove unused parameters (#525) we dont seem to need Fields::m_F anymore (#524) first preparation to enable multiple levels (#523) when odd number of cells, no need to average to get slice io (#521) CMake 3.20+ and CUDA: Modernized AMReX (#522) Update RNG (#520) switch assert to >0 density in adaptive time step (#518) Add atomic mass table for Plasmas (#510) Add beam selection for IO (#514) [mini] Sphinx: fix link in typo (#516) initialize m_adaptive_density (#515) move Diagnostic class from Fields to Hipace class (#513) add Adios2 support (#508) add proton element for convenience (#507) [sphinx] add links and logos to package managers (#506) Add possibility to input multiple beams at once (#502) [mini] clearer naming of direction (#501) Renaming to HiPACE++ (#505) conversion to normalized units for explicit solver (#499) remove hardcoded lev calls (#503) enable multiple boxes per rank (#493) add the possibility to have different species of beams (#492) remove deprecated comment (#500) Fix mass calculation for Dalton (#497) fix typo (#498) fix typo in execution command (#495) fix typos in readme (#491) [mini] add documentation badge (#490) add doc for juwels and maxwell (#489) change names from WarpX to Hipace++ (#485) Add get_started example (#488) add subcycling for beams (#487) introduce subheaddings (#486) Last changes for going open-source (#484) Add Cl test for Beam input from_file (#479) communicate physical time (#482) add second flush for beam IO (#480) assert no ion motion with explicit solver (#477) assert explicit isn't used with SI (#478) clean a few compilation warning (#481) updating a few parameters in the sphinx documentation (#473) option to not compile the MG solver (#476) parallelization for beam deposition in next slice (#458) clean up input parameters for bxby solver (#475) adding more parameters to the sphinx documentation (#471) [mini] comply with convention for variable parameter names (#470) Add Plasma Ionization using ADK Model (#456) fix transverse beam currents for explicit solver (#468) Fix explicit solver (#459) CI test for hosing and ion motion (#466) add hollow core plasma profile (#463) change parabolic profile from channel_radius to parabolic_curvature (#464) cuFFTUtils: Add Missing Include (#461) minor update of available input parameters (#460) fix sign of psi (#455) remove wrong assert (#454) Fix shift in time between fields and beam in IO (#453) deposit jx and jy of the beam on the next slice (#451) Limit number of significant digits in checksums (#444) Use previous slice as MG initial guess for explicit solver (#450) store MG solver to initialize it only once, to improve performance (#449) Replace predictor-corrector by analytic integration and multigrid solve (#437) Call OpenPMDWriter::InitDiagnostics() only if they are actually written (#447) Add correlated energy spread (#446) Remove option to dump to plotfiles (#445) add the possibility to have a parabolic plasma profile (#415) openPMD: clean up 'injection_type = restart' and add SI units to beam output (#423) adding ion motion (#439) must pass charge and mass by reference (#438) set default for skip empty comms to false (#436) Enable multiple plasma species (#432) change assert in predictor corrector loop to Warning (#435) Stop communicating if only empty boxes downstream (#434) Print Version (#433) last rank needs to resize to remove particles from previous time step (#426) Fix b field error calculation (#430) add option to not deposit Jx and Jy of the beam (#431) add additional diagnostics for the predictor corrector loop (#427) CMake: Update AMReX Particle Precision (#425) remove deprecated parameter (#422) remove configure_mpiexec from cmake (#421) AMReX: Skip AMRLEVEL (#403) Add licensing files in preparation of open-source release (#419) [WIP] New pipeline (#407) Constant accelerating field (#372) Add a paragraph on wandpic in the tex file (#354) #190 Performance changes to linear_wake analysis (#348) only write important field data to file (#346) renaming to the correctly describing name peak_current_density (#350) only run CI on development (#352) Adding possibility to write current directly to grid (#349) adding profiling for SolveOneSlice() (#343) CMake: Quick, Local Dependencies (#347) openPMD: restart simulation and multiple Beams (#325) fix bug by using std::abs instead of abs (#340) Transverse beam redistribute (#339) assert that the number of cells doesn't overflow int (#342) only init openPMD data if outputperiod > 0 (#326) Remove redundant which_slice from plasma particle advance (#328) add helpful error message, if user specifies output_period=0 (#327) Doc: update tex file with the algorithm description (#323) send beam particle information only at initialization (#322) [SCALING TEST] Only allocate required field components in each slice (#320) Readin from HiPACE-C files improved + conversion script (#315) openPMD-api: new CMake Control (tests) (#312) Optimize packing and unpacking particles to pinned memory buffers. (#308) README: openPMD-api Install (#313) removing namespace io (#311) checksum.py: unused import "re" (#310) openPMD: 0.13.1 (#309) Reset plasma particle weight to the initial value (#302) fix compiler warning for compiling without openPMD (#303) Make openPMD default, including for CI (#291) Encapsulate field IO, first step to multiple slice IO (#300) fix #ifdef OPENPMD to get rid of compiler warnings (#299) add ifdef AMREX_USE_MPI around communication functions (#298) Fix non-blocking communication for adaptive time step (#296) cleaning of the openPMD beam write PR (#294) [mini] Clean compiler warnings (#293) checksum tests: abstract the backend, to enable either openPMD or yt (#292) Remove the option slice_beam: it is ALWAYS true (#289) openPMD: read input beam from HDF5 file (#285) Fixing momentum for openPMD I/O (#286) Sending info for adaptive time step via nonblocking communication (#282) openPMD: cleaning (#281) fixing typo in notify finish (#280) openPMD default Path: as in WarpX (#278) openPMD: write beam data (#277) Use HDF5 File to input Beam with openPMD (#276) [WIP] openPMD: Collective Open & Group Based (#274) openPMD: Guard Output, Avoid 2x Copy (#275) [openPMD] Communication of upstream beam particle number (#269) openPMD: Rebased Handle fields with Guards (#272) revert collective open (#273) openPMD: Collective Open & Group Based (#270) [mini] option to disable z push of beam particles (#268) CMake: Update GPU Backend Vars (#267) Add missing Device::synchronize() calls to Wait() and Notify(). (#266) openPMD output (fields) (#265) fixing index error in DST (#264) Accelerating CI (#263) Fix a classic implicit capture of *this bug (#262) Longitudinal particle exchanges (#261) also send the ion charge density inn pipeline (#259) Fix bug in which plasma particles were not being initialized on the right proc. (#258) typo in doc (#256) openPMD: Doc Quote & Version (#254) Adding openPMD support (#252) Full domain transversally for slice IO to avoid losing particles (#253) Clean 'using namespace amrex;' (#250) Longitudinally parallelized adaptive time step (#247) fixing order of AMReX includes (#251) fix typo in the example Jupyter notebook (#249) Capability to have multiple beams (#246) store a correct time step in output files (#248) Move a few files in a utils directory (#245) F needs guard cells when beam deposits on the 3d grid (#244) Adding tilted beam (#243) CI for adaptive timestep (#242) Adding an adaptive time step (#241) Const weight Gaussian beam based on density input (#235) adding a few general parameters to sphinx documentation (#237) [mini] Assert for slice beam for slice IO (#236) using DeviceVector instead of ManagedVector for beam and plasma particle init (#233) Fix parallelization (except for plasma particles) (#230) Adding breathe to sphinx documentation (#229) A few bugfixes for longitudinal parallelization for beam particles. (#228) Gaussian beam with fixed weight (#220) fix slice averaging and clean up its IC (#225) adding printout for QSA violating particles (#222) fixing an important error in the longitudinal plasma velocity (#224) Node-center slice IO so it is at the domain center (#221) quick fix to make the external field work on GPU (#219) Sphinx documentation (#217) Implementation of the beam pusher (#202) add a visualization notebook with all useful basic operations (#218) IO slice defined on slice geom, to output a 2d array (#215) option to NOT dump plasma particles (#216) reset particlecontainer dm and ba (#199) Fixing bug with initialization of arrays (#213) Coarsen beam injection box (#211) Only define slice box if needed (#212) Fix redistribute and handling of particles which violate the QSA (#207) Slice diagnostics (#206) add doxygen documentation for beam slice deposition (#203) CMake: New AMReX Options (#204) CI: CUDA Update (#205) check for predictor corrector loop divergence only if B field error tolerance > 0 (#201) Selfmade redistribute to avoid high memory shifting (#200) remove pedantic semicolumn (#196) 3D array has no guard cell (#195) Handling of plasma particles violating the quasi-static approximation (#193) add virtual destructor to abstract class (#191) adding the possibility of a finite radius plasma column (#192) fixed-ppc Gaussian beam (#189) Move slice solve to a separate function (#187) replace hipace.do_plot with more flexible hipace.output_period (#184) Turn off serial tests to spare CI time (#183) Bash: Exit Earl on Error (+Pipes) (#178) oops, forgot one renaming (#182) Fix a number of naming inconsistencies in CI and examples (#181) forget about assert_exit, python assert work well (#179) LWFA Analysis: Fix Typo (#180) Adding CI test in the blowout regime and removing now redundant can_beam test (#174) Fix SI (#170) fixing CI tests not triggering (#171) [mini] adding CI test for a linear wake vs theory (#167) Fix SI Poisson solver for transverse fields (#169) Reset all quantities at the beginning of each time step (#168) Reformat poisson (#164) Add option to call Gpu::Synchronize around profiler region (#160) proper number of grid points in the error calculation (#161) Correct ion charge deposition (#156) Fixing bug with particles being pushed to the next slice (#159) Minor Cleaning in the plasma current deposition + addition of safe guards (#155) [mini] Improving host-device performance by removing redundant copy call (#151) push/pop the transverse communicator only once in the loop over slices (#150) Minor cleaning, in particular fix the order of includes in 1 file. (#149) Renaming slices to WhichSilce::Next, This, Previous1, Previous2 (#148) Moving class FFTPoissonSolver and all field-only related functions from class Hipace to Fields (#147) Consistent naming for pseudo-potential on plasma particles (#140) Add option to put the 3D array in pinned memory so it stays on the host (#143) Wrap BL_PROFILE into HIPACE_PROFILE for more control (#139) Improved predictor corrector loop (#138) Option to deposit beam charge and current in the slice MultiFab (#132) Predictor-corrector loop to compute transverse magnetic fields (#133) Fix crash when no plasma is specified (#131) Solve fields Ex-By, Ey+Bx, Ez, and Bz (#129) Plasma particle pusher (#125) enabling coefficient and add for TransvereDerivative (#121) fix sign error in Poisson solver, and adapt CI scripts (they missed that :/) (#126) Deposit ion charge (#128) add some _rt and remove parallel test from script to reset benchmarks (#127) Deposit beam density (#120) CI: Doxygen Builds (#118) add WarpX Copyright header for file taken from WarpX (#117) Add .editorconfig file (#119) Deposit plasma density (#112) Turn off OpenMP by default, and improve benchmark reset script (#114) Improve checksums (#113) space between function name and bracket for declaration and definition (#111) Update plasma force terms (#108) Create pull_request_template.md Implementation of the first part of the actual plasma particle pusher (field gathering) (#101) add option to get given field of given level (#102) fix units and typo in current deposition (#99) Fix order 0 deposition (#98) Physical plasma current deposition + read-in of particle momentum as vector (#95) fix typo in CMake compilation flag (#94) typo: remove extra character (#92) Doxygen-readable docstring in all .H file (#91) only run CI on PR, not on push (#89) Modified input and input_normalized to allow for a comparison. Added … (#73) Add style checks, stolen from WarpX (#87) Reformat CI, add checksum, and make beam_in_vacuum smaller (#85) add 1 checksum regression test. Others should be copied from there (#84) Add automated test that compares with theory (#79) renamed the plasma pseudo potential to psi (#82) CMake: openPMD Suffix Move examples to subfolder (#67) CMake: RelWithDebInfo -O3 (#71) option to not have IO (#65) Expose plasma species options to the input file (#64) space before bracket for function definition/declaration (#63) Instrument the main functions (#62) Current deposition for plasma particles (#61) compute Bx (#59) clean includes and current deposition (#58) Enable normalized units (#57) support various deposition order Add test for By field in vacuum with can beam (#56) set val to 0 at the beginning of each step (#55) do NGP deposition (#53) Initialize a can beam (#52) Cleanup: remove extra ; use amrex::Math::floor instead of floor for DPC++ (#51) Change AMREX_USE_GPU to AMREX_USE_CUDA (#50) Assertions and minor changes in FFT solver. Reduce the size of slice BoxArray. (#48) CMake: DPC++, OMP Def., Binary Names (#47) Cleaning in the FFT solver (#46) CMake: MPI, Asserts and Advanced AMReX (#44) field communication in longitude direction (#43) Update CI Badge: macOS deactivated Update CI Badge: development CMake: Compute Backend & Precision (#42) Loop over slices. Tranverse FillBoundary for j and By. (#41) add two subcommunicators (#39) FFTW: stress again not needed with CUDA Update README: Dependencies/Options Current: GPU (#38)