TCGA WES processed by Demichelis Lab

Here we provide processed data of the TCGA WES collection related to the study by Ciani Y. et al, "Allele-specific informed genomic analysis identifies loss of heterozygosity as a common trait of impaired tumor-suppressive processes" that implements the SPICE pipeline. Processed data includes SNV/indels, genomic calls as allele specific copy number, and LOH/gene expression linear models results. For more information visit https://github.com/demichelislab/SPICE-pipeline

Related Organizations

University of Trento
Italy

Keywords

Allele-specific, Loss of heterozygosity, Genomics, Aneuploidy, Cancer

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