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This dataset contains input Tinker xyz and key files for the simulation of KcsA potassium channels in DOPC bilayer, a simple script for converting CHARMM pdb file to Tinker xyz file, and modified Tinker source code to support one-dimensional position restraints. "params.tar.gz" contains a description of the force field modifications. To use "mod2", add the following lines to the key file. #compatible with amoebabio18.prm polarize 5 1.4500 0.3900 3 polarize 11 1.4500 0.3900 9 polarize 3 1.7500 0.3900 1 5 7 50 225 227 polarize 9 1.7500 0.3900 1 7 11 50 225 227
{"references": ["Jing et al. Chemical Science, 2021. DOI: 10.1039/d1sc01887f"]}
potassium channels, polarizable force fields, molecular dynamics
potassium channels, polarizable force fields, molecular dynamics
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