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Clipper: p-value-free FDR control on high-throughput data from two conditions

Name: Clipper: p-value-free FDR control on high-throughput data from two conditions
Keywords: P-value, False discovery rate

descriptionPublicationkeyboard_double_arrow_right Preprint 31 Dec 2020Publisher:Zenodo

Authors: Ge, Xinzhou; Chen, Yiling Elaine; Li, Jingyi Jessica;

doi: 10.5281/zenodo.5115465 , 10.5281/zenodo.4404882 , 10.5281/zenodo.5115468 , 10.5281/zenodo.4404881

Clipper: p-value-free FDR control on high-throughput data from two conditions

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Abstract

This repository contains the codes and datasets used in the paper 'Clipper: p-value-free FDR control on high-throughput data from two conditions'. The preprint can be found at https://www.biorxiv.org/content/10.1101/2020.11.19.390773v3 1. codes_figures: codes for reproducing all the figures in the paper 2. codes_omics_data: codes used in all omics data analysis, including data preprocessing, synthetic data generation, and application of Clipper. 3. codes_simulation_data_generation: codes for simulation analysis, including generation of simulation datasets and calculation of power and FDR. 4. data_DEG_analysis: the processed human monocyte dataset 5. data_HIC_differentialanalysis: the processed HIC data for GM12878 cell line 6. data_simulation: all the simulation results

Keywords

P-value, False discovery rate

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