Code for Effective gene expression prediction from sequence by integrating long-range interactions

Authors: Avsec, Žiga; Agarwal, Vikram; Visentin, Daniel; Ledsam, Joseph R.; Grabska-Barwinska‎, Agnieszka; Taylor, Kyle R.; Assael, Yannis; +3 Authors

doi: 10.5281/zenodo.5098363 , 10.5281/zenodo.5098364 , 10.5281/zenodo.5098374 , 10.5281/zenodo.5098375

Code for Effective gene expression prediction from sequence by integrating long-range interactions

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Abstract

This package provides an implementation of the Enformer model and examples on running the model. If this source code or accompanying files are helpful for your research please cite the following publication: "Effective gene expression prediction from sequence by integrating long-range interactions" Žiga Avsec, Vikram Agarwal, Daniel Visentin, Joseph R. Ledsam, Agnieszka Grabska-Barwinska, Kyle R. Taylor, Yannis Assael, John Jumper, Pushmeet Kohli, David R. Kelley Please see also https://github.com/deepmind/deepmind-research/tree/master/enformer.

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