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Analysis of amino acid change dynamics reveals SARS-CoV-2 variant emergence

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 11 Jul 2021 English Publisher:ZenodoFunded by:EC | GeCo

Authors: Bernasconi, Anna; Mari, Lorenzo; Casagrandi, Renato; Ceri, Stefano;

doi: 10.5281/zenodo.5090169 , 10.5281/zenodo.5090168

Analysis of amino acid change dynamics reveals SARS-CoV-2 variant emergence

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Abstract

Data and code for paper "Analysis of amino acid change dynamics reveals SARS-CoV-2 variant emergence", now under revision. The repository contains: two files for each of 44 locations (including 19 countries and 25 US states) CoV_<location>_mut5_obs3_absolute.csv (a matrix of amino acid changes [rows], collection weeks [columns], counts of sequences with amino acid change [cells]) CoV_<location>_mut5_obs3_totals.csv (a vector of total collected sequences per each week [columns]) one lineage dictionary (lins_changes75_2_5000_1000.csv) one MATLAB script for reproducing all the results of the paper (variants_clustering.m)

Related Organizations

Polytechnic University of Milan
Italy

Keywords

SARS-CoV-2, Variants, Amino acid changes, COVID-19, Clustering

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