Dataset presenting the root phenotyping analysis performed in the paper: Bouché F, D’Aloia M, Tocquin P, Lobet G, Detry N, Périlleux C. 2016. Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana. Scientific Reports. The dataset contains: - 01-raw_images.zip: the orignal images of the petri dishes used for the analysis. The scale is 370 DPI - 02-processed_images.zip: images enhanced, cropped and renamed for the analysis. Analysis was performed using SmartRoot (Lobet et al. 2011). Each image has its corresponding RSML file containing the root architecture data. - plate_image_treatment.ijm: ImageJ macro for a pre-processing of the images, before the SmartRoot analysis - root_architecture_analysis.R: R script used for the architecture data analysis - root_architecture_data.csv : architecture data exported from SmartRoot. - images.zip: the plots generated using the R script