Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2019
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Conference object . 2019
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Other literature type . 2019
License: CC BY
Data sources: ZENODO
versions View all 2 versions
addClaim

TIN-X v2: modernized architecture with REST API for sustainability & interoperability

Authors: Yang, Jeremy; Cannon, Daniel; Bologa, Cristian; Mathias, Stephen; Jensen, Lars Juhl; Schürer, Stephan; Vidović, Dušica; +1 Authors

TIN-X v2: modernized architecture with REST API for sustainability & interoperability

Abstract

TIN-X is designed to prioritize and visualize associations between proteins and diseases, from scientific literature (PubMed) text mining by JensenLab, via TCRD, and organized by Drug Target Ontology (DTO) based disease and protein classifications. TIN-X was initially conceived and prototyped by Cristian Bologa, then engineered as a full stack webapp by Daniel Cannon, deployed via AWS. Motivated by its success and perceived value to researchers, TIN-X has been continually maintained, updated, and improved. Recently, TIN-X has undergone a major revision to version 2.0, designed and implemented by Iterative Consulting, LLC, co-founded by Daniel Cannon. The new architecture conforms to modern software engineering standards, includes a Swagger/Django REST API, D3 thin client, and tight integration with TCRD. Updates and deployment automation employs Docker and AWS (EC2, S3, CloudFront). Source code is managed via Bitbucket and GitHub. The improvements address the Resource Sharing Plan of KMC, and NIH policies and principles concerning digital resource sharing (e.g. FAIR) as emphasized by the NIH Strategic Plan for Data Science.

Related Organizations
Keywords

illuminating the druggable genome, text mining, drug discovery

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
    OpenAIRE UsageCounts
    Usage byUsageCounts
    visibility views 11
    download downloads 10
  • 11
    views
    10
    downloads
    Powered byOpenAIRE UsageCounts
Powered by OpenAIRE graph
Found an issue? Give us feedback
visibility
download
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
OpenAIRE UsageCountsDownloads provided by UsageCounts
0
Average
Average
Average
11
10
Green