2016-04-18 tl;dr (summary of changes) Flowr Rscript gets further enhancements, taking advantage of improved funr run function now accepts paths. # 'cherries' version cd <path to pipelines> flowr x=mypipeline # 'dates' version flowr x=<path to pipelines>/mypipeline Previously, flowr expected a specific structure, now using ~/.flowr.conf, one may specify their own structure - enabling flexibility. # 'cherries' version: a fixed directory structure was recommended: ~/flowr ├── conf │ ├── flowr.conf ├── pipelines │ ├── sleep_pipe.R ├── runs # 'dates' version: one may change the default paths to run, config files etc using ~/.flowr.conf # this file controls the location of these folders: flow_base_path ~/flowr # flowr home flow_conf_path {{flow_base_path}}/conf # path to configuration files, not required if using ~/.flowr.conf flow_run_path ~/flowr/runs # default home of all executed flows, you may change this flow_pipe_paths ~/flowr/pipelines,<add new paths...> # multiple paths can be specified using "," a few bug fixes in to_flow several other minor changes to messages, errors and warnings.