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Software . 2020
License: CC BY
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Software . 2020
License: CC BY
Data sources: ZENODO
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Software . 2020
License: CC BY
Data sources: Datacite
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Kleborate v2.0.0

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 09 Nov 2020 English Publisher:Zenodo
Authors: Holt, Kathryn; Lam, Margaret; Wick, Ryan;

doi: 10.5281/zenodo.4923015 , 10.5281/zenodo.4923014

Kleborate v2.0.0

Abstract

Kleborate is a tool to screen genome assemblies of Klebsiella pneumoniae and the Klebsiella pneumoniae species complex (KpSC) for: MLST sequence type species (e.g. K. pneumoniae, K. quasipneumoniae, K. variicola, etc.) ICEKp associated virulence loci: yersiniabactin (ybt), colibactin (clb), salmochelin (iro), hypermucoidy (rmpA) virulence plasmid associated loci: salmochelin (iro), aerobactin (iuc), hypermucoidy (rmpA, rmpA2) antimicrobial resistance determinants: acquired genes, SNPs, gene truncations and intrinsic β-lactamases K (capsule) and O antigen (LPS) serotype prediction, via wzi alleles and Kaptive This release (v2.0.0) is the one used for the manuscript describing Kleborate: Lam et al, 2021, Nature Communications. For documentation and developments see https://github.com/katholt/Kleborate

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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