ATOM3D: Protein Structure Ranking (PSR) Dataset

Authors: Townshend, Raphael J.L.; Vögele, Martin; Suriana, Patricia; Derry, Alexander; Powers, Alexander; Laloudakis, Yianni; Balachandar, Sidhika; +5 Authors

doi: 10.5281/zenodo.4915647 , 10.5281/zenodo.4915648

ATOM3D: Protein Structure Ranking (PSR) Dataset

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Abstract

Protein Structure Ranking (PSR) dataset from the ATOM3D project. This upload includes three zipped data directories: Full, unsplit dataset in LMDB format Split datasets, with each in LMDB format Text files containing train, validation, and test indices used to split raw dataset README containing dataset details

{"references": ["Townshend, R. J. L. et al. ATOM3D: Tasks On Molecules in Three Dimensions. In review (2020). http://arxiv.org/abs/2012.04035.", "Kryshtafovych, A., Schwede, T., et al. (2019). Proteins: Structure, Function and Bioinformatics, 87(12), 1011-1020."]}

Related Organizations

University of Chicago
United States
Stanford University
United States

Keywords

machine learning, Protein structure prediction, structural biology, protein model quality assessment

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