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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
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IR spectra of COVID-2019 virus (SARS-CoV-2) protein.

Authors: yess;

IR spectra of COVID-2019 virus (SARS-CoV-2) protein.

Abstract

The source of the MD simulation trajectories and structures we use to simulate the IR spectra of SARS-CoV-2 virus were obtained from Komatsu and co-workers (MD simulation trajectories of SARS-CoV-2) and D. E. Shaw research (MD simulation trajectories of SARS-CoV-1-ACE2, SARS-CoV-2-ACE2 and trimeric SARS-CoV-2 spike glycoprotein, receptor-binding domain of the SARS-CoV-2 spike and the human ACE2 receptor), respectively. The criteria of the snapshots chosen and the time steps of the obtained snapshots were stated as below: (1) For the snapshots of SARS-CoV-1 were chosen from 2 ns MD simulation, in total 1000 configurations were extracted with a 2 ps time step interval for calculating the IR spectra. (2) For the snapshots of SARS-CoV-2 were chosen from 10 us MD simulation, in total 10000 configurations were extracted with a 1 ns time step interval for calculating the IR spectra. (3) For the snapshots of SARS-CoV-1-ACE2 were chosen from 10 us MD simulation, in total 8334 configurations were extracted with a 1.2 ns time step interval from start time 1200ps – 10us for calculating the IR spectra. (4) For the snapshots of SARS-CoV-2-ACE2 were chosen from 10 us MD simulation, in total 8334 configurations were extracted with a 1.2 ns time step interval from start time 1200ps – 10us for calculating the IR spectra. (5) For the snapshots of Trimeric SARS-CoV-2 spike glycoprotein (closed state) were chosen from 10 us MD simulation, a total of 8334 configurations were extracted with an 1.2 ns interval from start time 1200ps – 10us (contains 9 trajectories, 1000 snapshots for No.1-8 trajectories, 334 snapshots for No.9 trajectory). We chose the first 800 snapshots in each of No.1-8 trajectories (6400 in total) to calculate the IR spectra. (6) For the snapshots of Trimeric SARS-CoV-2 spike glycoprotein (opened state) were chosen from 10 us MD simulation, a total of 8334 configurations were extracted with a 1.2 ns interval from start time 1200ps – 10us(contains 9 trajectories,1000 snapshots for No.1-8 trajectories, 334 snapshots for No.9 trajectory). We chose the first 800 snapshots in each of No.1-8 trajectories (6400 in total) to calculate the IR spectra.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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