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Software . 2016
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dhimmel/pathways v2.0: Compiling human pathway gene sets

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 02 Apr 2016Publisher:Zenodo
Authors: Himmelstein, Daniel S.; Pico, Alexander R.;

doi: 10.5281/zenodo.593860 , 10.5281/zenodo.48810

dhimmel/pathways v2.0: Compiling human pathway gene sets

Abstract

This release compiles 1,862 pathway gene sets (1,341 from Reactome, 298 from WikiPathways, and 223 from the PID). Reactome and the PID were retrieved via Pathway Commons v7. Compared to the previous release (dhimmel/pathways v1.1), this release removes MSigDB pathways due to licensing issues.

Keywords

WikiPathways, gene set, pathways, PID, Reactome, Rephetio

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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