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Dataset . 2021
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Dataset . 2021
License: CC BY
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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2021
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2021
License: CC BY
Data sources: ZENODO
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Claim

hg19 syntenic ages

Research datakeyboard_double_arrow_right Dataset 18 Mar 2021Publisher:Zenodo
Authors: Sarah Fong; John A. Capra;

doi: 10.5281/zenodo.4618495 , 10.5281/zenodo.4618494 , 10.5281/zenodo.4734606

hg19 syntenic ages

Abstract

# Hg19 46-way vertebrate tree syntenic block age files. Information for hg19 46-way vertebrate multiple sequence alignment can be found here - http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/README.txt # Scripts generating these files (1) Creating syntenic block .bed files https://github.com/slifong08/enh_ages/blob/54084ff12e521c20cc5288d6cb3590fac93c11ed/age_arch/manuscript_scripts/get_spec_count_msa-hg19.py (2) Assigning most recent common ancestor (MRCA) and patristic distances to syntenic blocks https://github.com/slifong08/enh_ages/blob/54084ff12e521c20cc5288d6cb3590fac93c11ed/age_arch/manuscript_scripts/get_synteny_age_hg19.py ### Bed file # File columns ["chr", "start", "end", "strand", "reference_genome", "species_count", "length_synteny_block", "max_mrca", "max_patr"] # Definitions "max_mrca" = the phylogenetic distance from Homo sapiens to the most recent common ancestor of the oldest taxon. "max_patr" = the phylogenetic distance from Homo sapiens to the oldest taxon. "species_count" = the number of species' genomes the syntenic block maps to.

Related Organizations
Keywords

hg19, most recent common ancestor, syntenic block age, 46-way vertebrate multiz

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
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