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miRNA target finder training datasets

Abstract

{"references": ["Park, S. Y., Choi, J. H., Oh, D. H., Johnson, J. C., Dassanayake, M., Jeong, D. H., & Oh, M. H. (2020). Genome-wide analysis of brassinosteroid responsive small RNAs in Arabidopsis thaliana. Genes & Genomics, 42(8), 957-969.", "Oh, Eunkyoo, et al. \"Cell elongation is regulated through a central circuit of interacting transcription factors in the Arabidopsis hypocotyl.\" elife 3 (2014): e03031.", "Zhang, R., Calixto, C.P.G., Marquez, Y., Venhuizen, P., Tzioutziou, N.A., Guo, W., Spensley, M., Frei dit Frey, N., Hirt, H., James, A.B., Nimmo, H.G., Barta, A., Kalyna, M., Brown, J.W.S (2016) AtRTD2: A Reference Transcript Dataset for accurate quantification of alternative splicing and expression changes in Arabidopsis thaliana RNA-seq data. bioRxiv doi: http://dx.doi.org/10.1101/051938", "PmiREN: a comprehensive encyclopedia of plant miRNAs. Z Guo, Z Kuang, Y Wang, Y Zhao, Y Tao, C Cheng, J Yang, X Lu, C Hao, T Wang, X Cao, J Wei, L Li, and X Yang. Nucleic Acids Res. 2019. doi: 10.1093/nar/gkz894.", "Lamesch, P., Berardini, T. Z., Li, D., Swarbreck, D., Wilks, C., Sasidharan, R., ... & Huala, E. (2012). The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools. Nucleic acids research, 40(D1), D1202-D1210."]}

Datasets needed to run the Galaxy training: miRNA target finder in Arabidopsis thaliana

Related Organizations
Keywords

miRNA, BR, arabidopsis, plant, rna-seq, mirna-seq

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
downloads
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