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Describing and packaging workflows using RO-Crate and BioCompute Objects

Authors: Stian Soiland-Reyes;

Describing and packaging workflows using RO-Crate and BioCompute Objects

Abstract

BioCompute Object (BCO) is a standard (IEEE 2791-2020) for describing computational workflows for regularory submission, e.g. a genomics workflow as part of personalized medicine. RO-Crate is a community-based specification for research data packaging of Research Objects with rich metadata, based on open standards and vocabularies like JSON-LD and schema.org. BCO RO-Crate is the combination of these two approaches, packaging a BCO and the workflow it describes in a RO-Crate. This webinar describes the tutorial on how to make the exemplar BCO RO-Crate, starting with a workflow run. The tutorial is based on an exemplar run of the Nextflow workflow nf-core/chipseq version 1.2.1 using test inputs, capture the results in a BCO which we then describe further as an RO-Crate, and finally package all the files using BagIt.

Presented in webinar for U.S. Food and Drug Administration (FDA), 2021-05-12

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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3
Top 10%
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73
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