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Behavior Atlas is a spatio-temporal decomposition framework for automatically detecting behavioral phenotypes. It receives 3D/2D continuous multidimensional motion features data input, and unsupervisedly decompose it into understandable behavioral modules/movements (e.g., walking, running, rearing). Our framework emphasizes the extraction of the temporal dynamics of movements. Without making model assumptions, similar movements with various time durations and temporal variability can be efficiently detected. Besides the decomposition, the constructed self-similarity matrix of these movement segments describes the structure of involved movements. Further dimensionality reduction and visualization enable us to construct the feature space of behavior. This helps us study the evolution of movement sequences for higher-order behavior and behavioral state transition caused by neural activity.
{"references": ["Mathis, A., Mamidanna, P., Cury, K. M., Abe, T., Murthy, V. N., Mathis, M. W., & Bethge, M. (2018). DeepLabCut: markerless pose estimation of user-defined body parts with deep learning. Nature neuroscience, 21(9), 1281-1289.", "Zhou, Feng, Fernando De la Torre, and Jessica K. Hodgins. \"Aligned cluster analysis for temporal segmentation of human motion.\" 2008 8th IEEE international conference on automatic face & gesture recognition. IEEE, 2008."]}
3D motion capture, Behavioral structure-inspired, Behavior phenotyping, Computational ethology, Behavioral dynamics
3D motion capture, Behavioral structure-inspired, Behavior phenotyping, Computational ethology, Behavioral dynamics
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