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G-quadruplex in the gene of the large subunit of plant RNA polymerase II: billion years old story

Authors: Adriana Volná; Martin Bartas; Václav Karlický; Jakub Nezval; Kristýna Kundrátová; Petr Pečinka; Vladimír Špunda; +1 Authors

G-quadruplex in the gene of the large subunit of plant RNA polymerase II: billion years old story

Abstract

Supplementary material to the journal article: Consist of: Difference CD spectra - comparison without and with previous UV treatment (Difference CD spectra - comparison without and with previous UV treatment.pdf) 40 bp long potential G4 locus is the most conserved site in the whole ~ 6000 bp long rpb1 gene. See the histogram below the alignment: the position of the G4 locus is depicted, together with the horizontal red dashed line indicating relative nucleotide conservation among aligned sequences of rpb1 (G4 locus is the most conserved within rpb1 gene.PNG) Prediction of G4-forming potential of inspected rpb1 locus(G4 sequences and scores.xlsx) Graphical abstract (Graphical abstract.PNG) PDB structure of modeled G-quadruplex structure (Modelled 3D structure of G4 from Bathycoccus prasinos.tar.gz) Multiple alignment of rpb1 paralogs (rpa1, rpc1, rpd1a, rpd1b) in Arabidopsis thaliana centered to G4 locus of rpb1 (Multiple_alignment_nrpsG4_arabidopsis.png) Multiple sequence alignment (using MUSCLE algorithm) of rpb1 CDS sequences (rpb1_aligned_sequences_all.txt) All 20 rpb1 CDS sequences in FASTA format (rpb1_sequences_all.txt) Five paralogs from Arabidopsis thaliana (rpa1,rpb1, rpc1, rpd1a, rpd1b) in FASTA format (rpbA_B_C_D sequences arabidopsis.txt) Gel electrophoresis and ThT staining of the selected G4-forming sequences

Related Organizations
Keywords

plant science, G-quadruplex, evolution, RNA polymerase II, circular dichroism

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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