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RNA-seq count and proteomics intensity data used in the Kopajtich, Smirnov, Stenton et al study

Authors: Dmitrii Smirnov; Robert Kopajtich; Sarah Stenton; Holger Prokisch;

RNA-seq count and proteomics intensity data used in the Kopajtich, Smirnov, Stenton et al study

Abstract

File description: raw_data proteomics_annotation: sample annotation. proteomics_not_normalized: Proteomics intensity matrix, gene IDs (names). proteingroups_not_normalized: Proteomics intensity matrix, Uniprot IDs. raw_counts: RNA-seq count matrix. Patient_HPO_phenotypes: Phenotype data recorded using HPO terms for genetically diagnosed cases. enrichment_proportions_variants: Results of rare variant enrichment/proportion analysis calculated on the full dataset. patient_variant_hpo_data: Gene annotation for all individuals from the study. Since the genetic data are not publicly shareable, we provide only gene-level information for outlier genes only. datasets disease_genes: List of Mendelian disease genes aggregated from several studies. HGNC_mito_groups: Subset of HGNC gene groups related to mitochondria. hgnc_mapping: mapping between Uniprot IDs and gene names FRASER_counts--hg19--gencode34 geneCounts: gene-level counts. k_j: split counts spanning from one exon to another. k_theta: non-split counts covering a splice site. n_psi3: total split counts from a given acceptor site. n_psi5: total split counts from a given donor site. n_theta: total split and non-split counts for a given splice site. Sample annotation describing each sample from the dataset. Description file with global information from the dataset. Tissue: Fibroblast, NHDF cell line Organism: Homo sapiens Genome assembly: hg19 Gene annotation: gencode29 / gencode34 / Uniprot Dataset contact: Holger Prokisch, prokisch@helmholtz-muenchen.de; Dmitrii Smirnov, dmitrii.smirnov@helmholtz-muenchen.de Citation: Cite both the resource using Zenodo's citation and the publication under References

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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