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Virus Sequences and Data Tables related to the Cenote Human Virome Database v1.1

Authors: Tisza, Michael J;

Virus Sequences and Data Tables related to the Cenote Human Virome Database v1.1

Abstract

CHVD_virus_sequences_v1.1.tar.gz= full nucleotide sequences of 45,033 dereplicated (95% ANI, 85% AF) virus OTUs. version 1.1 CHVD_virus_core_sequences_v1.1.tar.gz = nucleotide subsequences of CHVD_virus_sequences_v1.1, trimmed down to virus cores CHVD_clustered_mash99_v1.tar.gz = nucleotide sequences of virus contigs identified in the study LIGHTLY dereplicated. There will be lots of redundant sequence in this compared to the "CHVD_virus_sequences_v1.1". human_anelloviruses_not_in_genbank1.tar.gz = full length anellovirus genomes without close cognates in GenBank phage_encoded_spacers_v1.0.tar.gz = sequences of spacers encoded by phage from the Cenote Human Virome Database HV3_table1_bioprojects_w_body_location.xlsx = table of bioproject information HV3_table2_master_table.xlsx = table with lots of information for each virus OTU HV3_table3_mash_CHVD_genbank.xlsx = table of cognates between full length GenBank sequences and Cenote Human Virome Database sequences HV3_table4_mash_CHVD_GVD.xlsx = table of cognates between Gregory et al (Gut Virome Database) sequences and Cenote Human Virome Database sequences HV3_table5_viromeqc_alignment99.xlsx = table with viromeQC and % alignment to Cenote Human Virome Database (clustered@99%) for ~ 1000 VLP sequencing runs from SRA HV3_table6_phage_crisprs.xlsx = table with phage-phage CRISPR match network and putative bacterial hosts HV3_table7_vOTUs_multiple_bodysites.xlsx = table of virus OTUs prevalent in more than 1 body site HV3_table8_case-control_runs.xlsx = table with case/control information for all runs for each disease state analyzed unclassified_virus_vcontact2_network.cys = network file generated by VContact2 with unclassified virus genomes

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Cenote-Taker2, Human Virome

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
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