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Fast Simulations of Highly-Connected Spiking Cortical Models Using GPUs

Authors: Bruno Golosio; Bruno Golosio; Gianmarco Tiddia; Gianmarco Tiddia; Chiara De Luca; Chiara De Luca; Elena Pastorelli; +3 Authors

Fast Simulations of Highly-Connected Spiking Cortical Models Using GPUs

Abstract

Over the past decade there has been a growing interest in the development of parallel hardware systems for simulating large-scale networks of spiking neurons. Compared to other highly-parallel systems, GPU-accelerated solutions have the advantage of a relatively low cost and a great versatility, thanks also to the possibility of using the CUDA-C/C++ programming languages. NeuronGPU is a GPU library for large-scale simulations of spiking neural network models, written in the C++ and CUDA-C++ programming languages, based on a novel spike-delivery algorithm. This library includes simple LIF (leaky-integrate-and-fire) neuron models as well as several multisynapse AdEx (adaptive-exponential-integrate-and-fire) neuron models with current or conductance based synapses, different types of spike generators, tools for recording spikes, state variables and parameters, and it supports user-definable models. The numerical solution of the differential equations of the dynamics of the AdEx models is performed through a parallel implementation, written in CUDA-C++, of the fifth-order Runge-Kutta method with adaptive step-size control. In this work we evaluate the performance of this library on the simulation of a cortical microcircuit model, based on LIF neurons and current-based synapses, and on balanced networks of excitatory and inhibitory neurons, using AdEx or Izhikevich neuron models and conductance-based or current-based synapses. On these models, we will show that the proposed library achieves state-of-the-art performance in terms of simulation time per second of biological activity. In particular, using a single NVIDIA GeForce RTX 2080 Ti GPU board, the full-scale cortical-microcircuit model, which includes about 77,000 neurons and 3 · 108 connections, can be simulated at a speed very close to real time, while the simulation time of a balanced network of 1,000,000 AdEx neurons with 1,000 connections per neuron was about 70 s per second of biological activity.

Country
Italy
Keywords

FOS: Computer and information sciences, cortical microcircuits, conductance-based synapses, GPGPU, spiking neural network simulator, GPU, Computer Science - Neural and Evolutionary Computing, Neurosciences. Biological psychiatry. Neuropsychiatry, Spiking Neural network simulation, GPU; adaptive exponential integrate-and-fire neuron model; conductance-based synapses; cortical microcircuits; spiking neural network simulator., spiking neural network simulator; cortical microcircuits; adaptive exponential integrate-and-fire neuron model; conductance-based synapses; GPU, Computer Science - Distributed, Parallel, and Cluster Computing, Quantitative Biology - Neurons and Cognition, FOS: Biological sciences, Neurons and Cognition (q-bio.NC), Distributed, Parallel, and Cluster Computing (cs.DC), Neural and Evolutionary Computing (cs.NE), Simulation Engine, adaptive exponential integrate-and-fire neuron model, RC321-571, Neuroscience

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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