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Metagenome assemblies and metagenome-assembled genomes from the Daphnia magna microbiota

Research datakeyboard_double_arrow_right Dataset 11 Jan 2021Publisher:Zenodo
Authors: Reilly O. Cooper; Alaina C. Pfenning-Butterworth; Freddy L. Gonzalez; Kristina M. Amato; Clayton E. Cressler;

doi: 10.5281/zenodo.4432506 , 10.5281/zenodo.4432507 , 10.5281/zenodo.4435010

Metagenome assemblies and metagenome-assembled genomes from the Daphnia magna microbiota

Abstract

Metagenome assemblies generated from raw reads not mapping to the Daphnia magna genome for six samples assembled individually (G4, G14, S1-S4) and a coassembly of all six samples (a_assembly) using metaSPAdes in SPAdes v3.14. Assemblies can be found in metagenome_assemblies.zip. Metagenome-assembled genomes generated using VAMB v3.0.2 (vamb_bins.zip) and ProxiMeta (proximeta_bins.zip). These MAGs were taxonomically identified using GTDB-Tk v1.3 and quality checked using CheckM v1.1. Outputs from GTDB-Tk and CheckM can be found in the .tsv and .tab files, respectively.

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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