Companion code repository for: "A quantitative analysis of the interplay of environment, neighborhood and cell state in 3D spheroids"

This contains the complete snakemake workflow used to derive the results from raw data stored on Zenodo for the publication: "A quantitative analysis of the interplay of environment, neighborhood and cell state in 3D spheroids" Vito RT Zanotelli Matthias Leutenegger Xiao‐Kang Lun Fanny Georgi Natalie de Souza Bernd Bodenmiller Mol Syst Biol. (2020) 16: e9798 https://doi.org/10.15252/msb.20209798 Github Repository: https://github.com/BodenmillerGroup/SpheroidPublication/releases/tag/v1.1 In addition to the Github repository, this archive also contains all the Singularity containers used for the analysis.

Related Organizations

University of Zurich
Switzerland

Keywords

Ecology, Science Policy, analysis, Cell Biology, interplay, RT, Inorganic Chemistry, Github, http, Space Science, Environmental Sciences not elsewhere classified, Companion code repository, 3 D spheroids, cell state, Molecular Biology, Developmental Biology, Biological Sciences not elsewhere classified, neighborhood, Souza Bernd Bodenmiller Mol Syst Biol

Impact byBIP!

	selected citations These citations are derived from selected sources. This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average