<script type="text/javascript">
<!--
document.write('<div id="oa_widget"></div>');
document.write('<script type="text/javascript" src="https://www.openaire.eu/index.php?option=com_openaire&view=widget&format=raw&projectId=undefined&type=result"></script>');
-->
</script>

COPY SCRIPT

For further information contact us at helpdesk@openaire.eu

Neuronal cell labelled with anti MAP2 antibody - sample image for software testing

Name: Neuronal cell labelled with anti MAP2 antibody - sample image for software testing
Creator: Lydia, DANGLOT
Keywords: hippocampal, confocal, neuron, cell shape

Research datakeyboard_double_arrow_right Dataset 15 Dec 2020Publisher:Zenodo

Authors: Lydia, DANGLOT;

doi: 10.5281/zenodo.4322944 , 10.5281/zenodo.4322943

Neuronal cell labelled with anti MAP2 antibody - sample image for software testing

- Summary
- Subjects
- Related research
  (2)
- Metrics

Abstract

Hippocampal neurons in culture seeded on glass coverslip. Dendritic extensions are labeled with antibody against MAP2, a protein associated with microtubules and nucleus is labeled with DAPI. The resulting signal give acces to the neuronal cell body and dendrite. Here the axon is not labeled. This picture has been taken on a Leica DMRE microscope with a 40x objective. This is a sample demo to be used to test our automatic segmentation of neuronal cells thanks to the Easy cell shape protocol, available freely on Icy software. You can download the software (PC, Mac or linux) and have access to the full documentation of this solution on http://icy.bioimageanalysis.org/protocol/easy-cell-shape-with-hk-means/ (Publication ID: ICY-77638). It segments in a user friendly mode the cell shape using the hk-mean plugin that applies a N-class thresholding based on a K-Means classification of the image histogram.

Keywords

hippocampal, confocal, neuron, cell shape

Filter by relation

All relations

arrow_drop_down

2 Research products, page 1 of 1

Easy Cell shape with HK-Means protocol - graphical programming for Icy software
2020IsSupplementedBy
Neuronal cell labelled with anti PSD95 and homer antibodies - sample image for software testing of Easy SODA
2020IsAmongTopNSimilarDocuments

Impact byBIP!

	citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	0
	popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.	Average
	influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).	Average
	impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.	Average