This is the code and associated data that was used to generate conclusions for the following manuscript published in Applied and Environmental Microbiology: DOI: 10.1128/AEM.02278-20 Implementation of ATP and Microbial Indicator Testing for Hygiene Monitoring in a Tofu Production Facility Improves Product Quality and Hygienic Conditions of Food Contact Surfaces: A Case Study Authors: Jonathan H. Sogin(a), Gabriela Lopez Velasco(b), Burcu Yordem(b), Cari K. Lingle(b), John M. David(b), Mario Cobo(a), Randy W. Worobo(a) (a)Department of Food Science, Cornell University, Ithaca, NY, USA (b)3M Company, St. Paul, MN, USA Address correspondence to Jonathan H. Sogin, jhs397@cornell.edu

Changes were made to the V1 R script to document editorial changes to figures to comply with publication requirements and polish mismatched fonts. 1. Font change of Figure 2 labels 'Phase 1', 'Phase 2', and 'Phase 3' to a serif-style font 2. Figure 3 legend, '(LAB)' added to clarify lactic acid bacteria in figure 3. Figures 4 and 5, removal of phase 1 and 3 legend, as information is already conveyed on X axis 4. Figures 4 and 5, clarification of log CFU/g to log[10] CFU/g 5. Addition of a figure export section that documents the size and resolution of publication-quality figures exported from R.