Microbiome dataset used in SIMON analysis for early-stage detection of cancer

The Zeller dataset contains information on the microbiome species abundance in healthy individuals and colorectal cancer patients (doi: 10.15252/msb.20145645) and was used for the SIMON analysis as described (https://doi.org/10.1101/2020.08.16.252767). The data was access through MetagenomicData package as described by Pasolli and colleagues (doi: 10.1038/nmeth.4468). In total 184 individuals were included of which 93 were healthy controls and 91 colorectal cancer patients.

Related Organizations

THE CHANCELLOR, MASTERS AND SCHOLARS OF THE UNIVERSITY OF OXFORD
United Kingdom
University of Oxford
United Kingdom

Keywords

cancer, metabiome, predictive modeling, data mining, machine learning

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